Formerly College of Agriculture, it began its operation in 1972 when Republic Act 6590, an Act amending RA 6341, which authorized the CSC Board Trustees to open additional courses, was implemented. A total of 113 initial enrollees were posted during the 1st semester of SY 1972-1973.

It was in later years when the merging of the College of Fisheries was undertaken and the college was named College of Agriculture and Fisheries. It offered the Bachelor of Science in Agriculture majors in Agricultural Education, Animal Science, Agroforestry, Crop Science and Fisheries, and Two-Year Certificate in Agricultural Technology.

In 2006, the college became an accredited member of the Association of Colleges of Agriculture in the Philippines (ACAP) and Provincial Institute for Agriculture (PIA) on 2009. Revision of curriculum, faculty development and updating of library holding in farm tools and equipment were among the programs carried out since the inception of the Agriculturist Licensure Examination in 2003. The college once more revised the BS Agriculture curriculum with four majors into a general Bachelor of Science in Agriculture in 2008. It offered the Bachelor of Science in Agriculture Major in Crop Science, Animal Science, General Curriculum Program and Two-Year Certificate in Agricultural Technology.

Because of the implementation of K+12 curriculum, revision and application of existing and new curriculum were carried out. As of 2018, the College of Agriculture and Fisheries is offering Bachelor of Science in Agriculture General Curriculum, Bachelor of Science in Agriculture Major in Animal Husbandry, Bachelor of Science in Agriculture Major in Crop Science, Bachelor of Science in Fisheries, Bachelor of Science in Agribusiness and Two-year certificate in Agriculture.

Bachelor of Science in Fisheries

The degree program described herein shall be called BACHELOR OF SCIENCE IN FISHERIES (BSFi). BSFi focuses on concepts of fisheries management, environmental management and multi-sectoral approach to coastal resource management in order to contribute to the country’s need for sustainable fisheries. The program also provides competencies in all aspects of fisheries, research, extension and production.

Bachelor of Science in Agriculture

The program shall be called BACHELOR OF SCIENCE IN AGRICULTURE (BSA).The BSA program aims to educate students in the scientific habit of thought, entrepreneurial skills and prepare them to become professionals with entry-level competencies in technical agriculture. It emphasizes the processes and techniques in identifying, diagnosing and analyzing problems and in designing, packaging and applying technologies needed in the development and conservation of the agriculture and food system resources.

Bachelor of Science in Agribusiness

The proposed program shall be called BACHELOR OF SCIENCE IN AGRIBUSINESS (BSAB).The BSAB curriculum is based in competency standard for agribusiness. It focuses on creating and going into business in agriculture. It is systems-oriented emphasizing on the interactions of all activities and factors affecting the manufacture and distribution of farm supplies; production and activities on the farm; and the storage, processing and distribution of farm commodities and items made from them, locally and globally within the context of the country’s biophysical, socio-cultural, political, economic environment and development needs.